All functions

A0_get_samples

Acquire Samples from Cluster Repository

B0_PE_chip_atac_process

Paired-End ChIP-seq & ATAC-seq Processing

B0_SE_chip_atac_process

Single-End ChIP-seq & ATAC-seq Processing

B1_atac_shift

ATAC-seq Processing: Read Shifting

B2_finalize_fix_bams

Finalize bams

C0_make_bigwig

Create Normalized bigwig Tracks

D0_combine_by_condition

Link data folders into condition specific repo.

E0_call_peaks_macs2

Calling Peaks with MACS2

E1_call_peaks_music

Calling Peaks with MUSIC

E2_call_peaks_bcp

Calling Peaks with BCP

F0_create_trackhub

Automagic UCSC Track Hub writer.

F1_create_trackhub_inputs

Automagic UCSC Track Hub writer.

R0_process_rna

Paired-End RNA-seq Processing

R1_run_kallisto

Paired-End RNA-seq Quantification

Z0_collect_data

Collects Data to Stage for Transfer